Fixed typos

.gitignore

@@ -7,4 +7,6 @@ src/packsim.c
 
 figures
 simulations
-old_simulations
+old_simulations
+
+*.json

README.md

@@ -69,7 +69,7 @@ This mode simulates the relaxing of the objects to its equilibrium. The threshol
 ```
 
 #### Search
-This mode searches for equilibrium until `eq_stop_count` equilibria are found. Additionally, if the nullity of the Hessian at the equilibrium is greater than 2. (This is due to periodicity, as any translation is another equilibrium.) In this case, the `manifold_step_size` parameter is used to traverse along it.
+This mode searches for equilibrium until `eq_stop_count` equilibria are found. Additionally, the nullity of the Hessian at the equilibrium may be greater than 2. (2 is guaranteed by periodicity, as any translation is another equilibrium.) In this case, the `manifold_step_size` parameter is used to traverse along it.
 
 ```jsonc
 {

shrink_energy_comparison.py

@@ -26,7 +26,7 @@ def get_torus_config_energies(n: int, widths: np.ndarray, h: float, r: float,
 		sim = Simulation(n, w, h, r, energy)
 		configs = []
 
-		for j in range(1):
+		for j in range(2):
 			for c in range(1,n):	# Ignore 0, tends to error.
 				config = (1,c) if j == 0 else (c,1)
 				sim.add_frame(torus=config)
@@ -132,7 +132,8 @@ def main():
 	ax.title.set_text('Basin of Attraction')
 	ax.set_xlabel("Width")
 	ax.set_ylabel("Disordered Equilibria")
-	ax.set_yticks(np.arange(0,105, 5))
+	boa_y_min = round(min(all_disorder_count)/20)*20 - 5
+	ax.set_yticks(np.arange(boa_y_min, 100.01, 2.5))
 	fig.savefig(fig_folder / "Basin of Attraction.png")